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Hsp70 at the membrane: driving protein translocation
© Craig. 2018
Published: 17 January 2018
Efficient movement of proteins across membranes is required for cell health. The translocation process is particularly challenging when the channel in the membrane through which proteins must pass is narrow—such as those in the membranes of the endoplasmic reticulum and mitochondria. Hsp70 molecular chaperones play roles on both sides of these membranes, ensuring efficient translocation of proteins synthesized on cytosolic ribosomes into the interior of these organelles. The “import motor” in the mitochondrial matrix, which is essential for driving the movement of proteins across the mitochondrial inner membrane, is arguably the most complex Hsp70-based system in the cell.
Challenges in protein translocation across membranes
Proteins synthesized on cytosolic ribosomes and translocated across membranes into organelles play critical roles in cell and organismal physiology. Translocation of proteins into the endoplasmic reticulum (ER) and mitochondria is especially demanding. The protein complexes embedded in the membrane, referred to as translocases or translocons, through which the proteins must pass, have narrow channels [1, 2]. They are able to accommodate only a completely unfolded chain or, at most, an α-helix. Thus, postponing folding, yet preventing aggregation, of a protein is necessary for its efficient translocation. In addition, protein movement must not only be vectorial, that is, unidirectional from the cytosol into the organelle, it must also be efficient to keep up with the heavy cellular demand for organelle function.
For many ER proteins, the co-translational nature of the translocation process overcomes such hurdles. Coupling of protein translation and protein translocation minimizes the issue of tertiary structure hindering passage through the translocation channel, while using the “force” of protein synthesis to drive directional movement across the membrane. Via action of signal recognition particle (SRP) binding to targeting sequences at the N-terminus of an ER-destined protein, the translating ribosome docks directly onto the translocon of the ER membrane [3, 4]. This precise docking provides a direct conduit for the nascent polypeptide chain from the ribosome exit tunnel through the channel in the membrane-imbedded translocon . However, in organisms as diverse as budding yeast (Saccharomyces cerevisiae) and humans, a substantial number of proteins are translocated post-translationally into the ER . Moreover, mitochondria have no exact analog of the SRP system that results in a direct physical connection between the ribosome and the translocon of the outer mitochondrial membrane.
Hsp70 molecular chaperones function both in the cytosol and internally on the luminal/matrix face of ER/mitochondrial membranes, helping cells overcome these inherent challenges of protein translocation across membranes. In this review, particular attention is given to the Hsp70 system of the mitochondrial matrix, which is required for the translocation of all nuclear-encoded proteins into this subcompartment . Many fundamental aspects of both ER and mitochondrial translocation systems have been highly conserved in evolution. Throughout, S. cerevisiae nomenclature is used as much of the work to understand the mechanism of protein import and molecular chaperone function was performed using this model organism.
Properties of Hsp70s critical for cellular functions
Hsp70 molecular chaperones are present in all major cellular compartments (i.e., cytosol, nucleus, ER, and mitochondria), functioning in diverse cellular processes from protein folding to disassembly of protein complexes to protein translocation across membranes. While the protein translocation is the focus of this review, Hsp70s, when involved in any of these processes, bind to seven-residue segments of polypeptide that are overall hydrophobic in nature . Virtually every protein that is not folded into its native state has multiple accessible Hsp70 binding sites, because residues found in the hydrophobic core in the native conformation are exposed. It has been estimated that most proteins have an Hsp70 binding site every 30–40 residues .
Routes to the mitochondria and ER involving Hsp70 action
Hsp70 on the cytosolic side of the membrane
Data obtained in the 1990s pointed to a role for cytosolic Hsp70 chaperones in the translocation of proteins into both the ER and mitochondria [15–18]. The idea put forth at the time, and consistent with emerging in vitro evidence that chaperones help prevent aggregation of unfolded proteins , was that binding prevents formation of tertiary structure that hinders threading of the protein through narrow translocation channels. Overall, work over the ensuing years has supported this general idea. Recent data have brought both clarification and evidence of unanticipated complexity. On one hand, the issue of aggregation of proteins destined for the mitochondria is likely not as extreme as originally envisioned. Translation of many proteins destined for mitochondria is now known to occur at the mitochondrial outer membrane, in close proximity to the TOM complex [20, 21], rather than in the bulk cytosol, as previously thought. On the other hand, post-translational translocation into the ER via mechanisms not dependent on SRP are more common than previously appreciated . As described below, besides helping to maintain proteins in a partially folded, yet soluble state, Hsp70 binding targets substrates to the mitochondrial outer membrane and ER translocon channels. In both cases the C-terminal EEVD tetrapeptide of Hsp70 is involved in the targeting.
During post-translational translocation into the ER, the EEVD of Ssa Hsp70 interacts with the TPR domain of Sec72, a SEC61 translocon-associated protein  (Fig. 4). Though lacking a C-terminal EEVD tetrapeptide, Ssb Hsp70s, which associate with ribosomes near the exit of the tunnel, also interact with Sec72 . This interaction occurs via Ssb’s N-terminal nucleotide binding domain. Metazoans do not have a Sec72 homolog, but mammals have a second J-protein, ERj1 (DnaJC1) in the ER membrane. The lumenal J-domain functions in protein translocation across the membrane. A cytosolic domain binds ribosomes near the tunnel exit site , and may help recruit them to the ER membrane.
Analysis of individual proteins gives substantial support to the idea that the Ssa Hsp70 class plays a significant role in post-translational translocation [30–33]. For Ssb Hsp70s, recent in vivo selective ribosome profiling data provide genome-wide insights into the breadth of its nascent chain interactions . On the order of 80% of the different nascent chains known to be destined for mitochondria were found to bind to Ssb, consistent with observed aggregation of mitochondrial proteins in cells lacking Ssb  and the ability of increased expression of Ssb to overcome the growth defect caused by inefficient mitochondrial protein translocation . Ssb also interacts with almost half of all the different ER proteins. While most of these interactors do not require SRP for ER targeting (e.g., tail anchored proteins ), Ssb also binds a significant number of proteins known to transit into the ER via the SRP-dependent mechanism. In these, the first Ssb binding site to emerge from the ribosome is typically more N-terminal than the SRP binding site . Many questions remain. Does an individual nascent chain bind both Ssb and SRP? Is there a mechanistic cooperation between Ssb and SRP, perhaps a handing-over from one system to the other? Or is this binding indicative of alternative pathways, SRP-dependent and SRP-independent?
Hsp70 on the matrix/lumenal side of the membrane
Hsp70s in the mitochondrial matrix and the ER lumen play a critical and more active role in protein translocation than do those on the cytosolic side. They form the core of the machinery, often called “import motors”, that binds the translocating polypeptide and drives it across the membrane. Hsp70s of both these import motors utilize the same biochemical properties to drive translocation as used by Hsp70s when functioning in other biological processes—initial interaction of Hsp70-ATP with substrate, stabilized by J-protein driven ATP hydrolysis, then destabilized by NEF-driven nucleotide exchange. ER lumenal Hsp70 (officially Kar2 in yeast; but often called BiP in both yeast and metazoans) drives post-translational import of proteins through the Sec61 channel [1, 5]. Sec63 is this motor’s dedicated J-protein; it associates with the SEC61 complex, as a component of the Sec62/63 complex, which in yeast also includes Sec71/72. PAM, the mitochondrial presequence associated motor of the matrix, provides the driving force for movement of all nuclear-encoded matrix proteins [2, 6, 38]. Below I concentrate on mitochondrial PAM, as it has been studied much more extensively than the lumenal ER Hsp70 system.
Steps of the presequence import pathway into the mitochondrial matrix
The TIM23 complex contains three essential proteins. Two, Tim23 and Tim17, are related integral membrane proteins (Fig. 5b). Tim23 forms the channel; Tim17 likely plays a role in maintaining the translocon’s structure and channel gating [39–41]. Both have four transmembrane helices, with the N- and C-termini extending into the intermembrane space. Two loops (1 and 3) between the membrane spanning segments, on the order of 23 and 10 residues, respectively, extend into the matrix and serve as interaction sites for PAM. More than one molecule of both Tim23 and Tim17 are present in each TIM23 complex; the exact number is not known, a complicating factor in understanding the mechanism of action of the import motor. The third essential subunit is Tim50. Both Tim50 and Tim23 have domains that extend into the intermembrane space and interact with the targeting sequence, promoting the first step of translocation across the inner membrane, that is, opening of the gated Tim23 channel [42, 43].
The TIM23 complex is also responsible for the transport of some inner membrane proteins (Fig. 2). For many of these, PAM is not involved. Rather, the membrane potential drives the presequence targeting sequence through the channel; an adjacent “stop-transfer” sequence arrests movement and facilitates lateral transfer into the membrane [6, 44]. But in other cases, proteins are first imported into the matrix, then insertion into the inner membrane is facilitated by the action of the protein insertion machinery, called the oxidase assembly (OXA) system . This process is often referred to as conservative sorting because of its resemblance to transport systems of bacteria, the progenitor of mitochondria . In a few cases, the PAM/OXA system is used for some of a protein’s transmembrane domains, but the stop-transfer, lateral gating system for others [47, 48].
Architecture of the presequence associated motor PAM
PAM is composed of six subunits (Fig. 5), five of which are essential. Three are core Hsp70 system essential components—Hsp70 Ssc1, J-protein Pam18 (also called Tim14), and NEF Mge1 [6, 38]. The Hsp70 and NEF are the same molecules that carry out other processes in the mitochondrial matrix, including general protein folding and remodeling of protein complexes . However, J-protein Pam18, like its analog Sec63 in the ER lumen, is specific for protein translocation. When Ssc1 and Mge1 engage in other biological processes, they work with a different J-protein, such as Mdj1 [50, 51]. The two other essential components are Pam16 (also called Tim16) [52–54] and Tim44. Tim44 is considered the “hub” of the motor. It serves as the connector between the motor and the translocon, interacting with the TIM23 complex and with other motor components [55, 56]. The nonessential motor component Pam17, a membrane protein having a matrix domain, appears to play a yet-to-be clearly defined early role [57–59].
The architecture of PAM is complex (Fig. 5). Pam18 and Pam16, in addition to Tim44, have multiple interactions that provide functional redundancy and robustness. J-protein Pam18 has a single transmembrane segment. On the intermembrane space side of the membrane it interacts with Tim17 , and on the matrix side with Pam16 [61–64]. In turn, Pam16, via its N-terminus, interacts with Tim44 [63, 65]. Pam16 has a degenerate J-like domain, incapable of stimulating Hsp70’s ATPase activity. Rather, along with adjacent residues, the J-like domain interacts with Pam18’s J-domain [61, 62]. These interactions on both sides of the membrane are important for Pam18’s association with the TIM23 translocon .
But the Tim44 picture is not as “simple” as the NTD interacting with the motor and the CTD with the translocon. Loop 1 of Tim23 also crosslinks to Tim44’s NTD . This complex crosslinking pattern is consistent with the ability of the two domains to support viability when expressed separately (i.e., in trans) ; but such yeast cells grow very slowly, underscoring the complexity of Tim44 function. However, as Tim23’s loop 1 is only 24 residues, it is unlikely that both domains interact with the same Tim23 molecule simultaneously . Thus, whether one Tim44 molecule interacts with two different Tim23 molecules simultaneously or interactions of the CTD and NTD occur sequentially to one Tim23 molecule remains an open question, leaving unresolved important mechanistic and regulatory questions raised below. That the stoichiometry of Tim23 in the TIM23 complex is also unresolved and that Tim44 has been reported to be a dimer further confound a mechanistic understanding of PAM function .
How does an import motor mechanistically drive efficient protein translocation?
For many years two challenging questions have vexed workers studying PAM: what mechanistic principle(s) are behind motor function, and what motor characteristics drive motor efficiency? Two models of import motor action were put forward soon after it became clear that Hsp70 was required for post-translational translocation across membranes—“brownian (molecular) ratchet” and “power stroke” [77–79]. The mechanism by which Hsp70 binding to the translocating polypeptide drives directional movement is the fundamental difference between the two models. In the power stroke model, the polypeptide chain is pulled into the matrix by Hsp70 acting as a lever arm to generate force through conformational change, with Tim44 serving as a fulcrum. In the simplest form of the Brownian motion model, binding of Hsp70 to the translocating polypeptide prevents its backsliding because of its large size compared to the narrow import channel. Each model was appealing, yet problematic, in its own way. The power stroke model, as envisioned, helped rationalize data showing that Hsp70 binding not only drove translocation of an unfolded polypeptide into the matrix, but generated sufficient power to unfold a protein domain “stuck” at the outer membrane [80–82]. But whether Hsp70’s conformational changes are of sufficient magnitude to move the chain through the channel has not been critically addressed. On the other hand, the simplicity of the ratchet model was appealing. Indeed, early studies using an in vitro ER system showed Hsp70 BiP and J-protein Sec63 to be sufficient to move preproalpha factor, a small protein that is efficiently translocated post-translationally in vivo, through the SEC61 translocon . However, it was difficult to envision how simply preventing backsliding would suffice energetically for more challenging substrates.
For polypeptide translocation, the issues are more complex than uncoating clathrin cages. Not only must Hsp70 binding occur very close to the channel, but also a series of Hsp70 molecules must interact in rapid succession, each as close to the channel as possible. Interactions of Tim44 with motor components and with the translocon could serve both functions. Tim44 serves to bridge the interactions between Tim23/17 and both Hsp70 and J-protein Pam18 (via Pam16). In addition, binding of substrate by Hsp70 destabilizes its interaction with Tim44 [73, 86], thereby allowing binding of another Hsp70, and continuation of translocation (Fig. 6). For the motor to function efficiently, Hsp70 at the channel must be in the ATP-, not ADP-, bound state, to initiate interaction with the incoming polypeptide rapidly. Premature stimulation of ATP hydrolysis by the J-protein Pam18 in the absence of substrate (i.e., the translocating polypeptide) could occur, decreasing motor efficiency. But on the other hand, efficient motor function also requires rapid J-domain action as soon as the translocating polypeptide enters the matrix.
Discussion on the issue of keeping Hsp70 primed, in the ATP-state, has centered around Tim44’s interactions with multiple binding partners and the Pam18–Pam16 heterodimer. The idea that Tim44 may play an important role was boosted by the findings that the intrinsically disordered NTD binds preprotein targeting sequences [66, 87] in addition to Pam16/18 and Hsp70. Many scaffolding proteins involved in signal transduction and regulation  are intrinsically disordered, having different conformations, depending upon which of their binding partners they are interacting with. The idea that such conformational changes play a role in regulating motor function became more intriguing with the finding that the site to which the targeting sequence binds overlaps with residues important for binding of Hsp70 and Tim23  (Fig. 6a). This made it tempting to speculate that binding of the targeting sequence at this site, upon entrance into the matrix, induces a conformational change in Tim44 NTD that “activates” the motor. Perhaps conformational changes in Tim44 bring the Pam18 J-domain in close proximity to its binding site on Hsp70 [66, 89]. On the other hand, the Pam16–Pam18 interaction interface may be altered in some way. The idea that interaction of Pam18 with Pam16 may regulate Pam18’s ability to stimulate Hsp70’s ATPase activity stems from the observation that the Pam16–Pam18 heterodimer has on the order of 50% of the stimulatory ability of Pam18 alone [61, 90]. However, Pam18 variants having substitutions that reduce activity more than this support efficient mitochondrial import and robust cell growth . Also, a Pam18–Pam16 heterodimer of J- and J-like domain-containing fragments was found to be inactive on stimulation of Hsp70’s ATPase activity . While this inactivity could be indicative of a regulatory function, it could also be due to the absence of adjacent sequences shown to be important for forming an active complex . Thus, although the Pam18–Pam16 interaction is central to motor function and Tim44 has characteristics consistent with regulatory roles, it remains unresolved how either facilitates maintenance of the motor in a state primed for action.
As described above, considerable progress has been made towards understanding the action of Hsp70s in protein translocation on both sides of membranes. Many questions remain, however. On the cytosolic side of the membranes, as results of more genome-wide ribosome profiling studies become available, a better picture of Hsp70 interactions with nascent chains will develop, allowing more directed studies to understand the importance of these interactions. Also, as new information about organelle targeting systems emerge, it will be interesting to see how generally Hsp70 functions on the cytosolic side. For example, do Hsp70s play a role in the recently identified SND targeting system to the ER that uses the SEC61 translocon ? Regarding import motor function, clearly more detailed knowledge is needed to gain a mechanistic understanding not only of how this molecular machine acts but also how such efficiency is obtained. Unfortunately, the mitochondrial inner membrane translocases have been difficult to purify and resistant to structural analysis. Hopefully, the rapid advancements occurring in structural biology and single molecule approaches that have recently provided insight into the Tom40 translocon and Hsp70s [93, 94] will soon be productive for the TIM23 translocon and PAM as well.
Helpful comments by Szymon Ciesielski are appreciated. This work was supported by National Institutes of Health Grant GM27870.
The author declares she has no competing interests.
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